Reads by Length

The distribution of reads of specific lengths along the ORF.



Reads by Position and Length

Gene/read length/position-specific distribution of mapped reads along the 5' UTR, ORF and 3' UTR lengths. The ORF is indicated by the shaded grey area. The normalized reads are expressed as the proportion of actual reads and the mean within each ORF.



Reads by Codon

Codon specific mapped reads. The normalized reads are expressed as the proportion of total reads for corresponding nucleotides, and the mean for all codons.





RPKM

RPKM stands for Reads Per Kilobase of transcript per Million mapped reads. This plot presents the overall abundance of specific gene relative to its abundance in a curated set of wild-type datasets.

RPKM Density

The abundance of specific gene relative to the abundances of all other genes in the same data set.